IMAGeS team: IMages, leArning, Geometry and Statistics

Difference between revisions of "Vincent Noblet"

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[[fr:Vincent_Noblet]]
 
[[fr:Vincent_Noblet]]
<big>'''Research Engineer - HDR'''</big>
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<big>'''Research Engineer - HDR'''</big> <br />
 +
&nbsp; &nbsp; &nbsp; &nbsp;Head of  [[Biomedical image processing]] group <br />
 +
&nbsp; &nbsp; &nbsp; &nbsp;Head of [https://gaia.icube.unistra.fr GAIA] platform<br />
 +
&nbsp; &nbsp; &nbsp; &nbsp;Head of [http://plateforme.icube.unistra.fr/iris/index.php/Informatique_et_traitement_d%27images computer science and image processing] department of  [http://plateforme.icube.unistra.fr/iris/index.php/Accueil IRIS] platform
 +
 
 
<table width=100%>
 
<table width=100%>
 
<tr>
 
<tr>
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{| class="wikitable"
 
{| class="wikitable"
 
|-
 
|-
| ICube - MIV<br />  300 Bd Sébastien Brant<br /> BP 10413<br />  67412 Illkirch CEDEX - France<br /><br /> Phone: + 33 (0) 3 68 85 44 89<br />       Fax: + 33 (0) 3 68 85 44 97<br />     Office: '''C211''' <br />
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| ICube - IMAGeS<br />  300 Bd Sébastien Brant<br /> BP 10413<br />  67412 Illkirch CEDEX - France<br />
 +
'''Illkirch site: '''
 +
<br /> Phone: + 33 (0) 3 68 85 44 89<br /> Office: C211 <br />
 +
 
 +
'''IPB site: '''
 +
<br /> Phone: + 33 (0) 3 68 85 40 42<br /> Office: 109 <br />
 +
 
 
E-mail: '''vincent(dot)noblet(at)unistra(dot)fr'''<br />
 
E-mail: '''vincent(dot)noblet(at)unistra(dot)fr'''<br />
 
|}
 
|}
 
</td>
 
</td>
 
<td align=right>
 
<td align=right>
[[File:VNoblet.jpg|frameless|center]]
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[[File:PhotoPerso.jpg|frameless|center]]
 
</td>
 
</td>
 
</table>
 
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== Description of activities ==
 
== Description of activities ==
  
My research activities in the MIV team are within the field of [[Biomedical image processing]] and cover two main areas:
+
My research activities in the IMAGeS team are within the field of [[Biomedical image processing]] and cover two main areas:
 
* image registration
 
* image registration
 
* change detection in image sequences
 
* change detection in image sequences
  
Furthermore, as part of my activities within the [https://piiv.u-strasbg.fr/presentation/accueil/ plate-forme d'imagerie in vivo], I bring my expertise to the investigation of various problems in neuroscience requiring the setting up of appropriate image processing pipelines and the exploitation of large  image databases.
+
Furthermore, as part of my activities within the [http://plateforme.icube.unistra.fr/iris/index.php/Accueil IRIS plateform], I bring my expertise to the investigation of various problems in neuroscience requiring the setting up of appropriate image processing pipelines and the exploitation of large  image databases.
  
== Parcours ==
+
== Course ==
  
  
 
{|
 
{|
 
|-
 
|-
| Depuis 2005 ||  :  Ingénieur de recherche CNRS, ICube
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| Since 2005 ||  :  Research Engineer, CNRS, ICube
 
|-
 
|-
| juin 2015 || :  [http://icube-publis.unistra.fr/docs/9456/HDR-Noblet.pdf Habilitation à diriger des recherches] , UDS, Strasbourg  
+
| june 2015 || :  [http://icube-publis.unistra.fr/docs/9456/HDR-Noblet.pdf Habilitation degree] , UDS, Strasbourg  
 
|-
 
|-
| 2002 - 2006  || :  [http://icube-publis.unistra.fr/docs/1469/these_noblet.pdf Doctorat] (allocataire-moniteur), LSIIT, UMR 7005, ULP, Strasbourg
+
| 2002 - 2006  || :  [http://icube-publis.unistra.fr/docs/1469/these_noblet.pdf PhD degree], LSIIT, UMR 7005, ULP, Strasbourg
 
|-
 
|-
| 2001 - 2002 || :  D.E.A. Mécanique et Ingénierie, option Biomécanique, ULP, Strasbourg   
+
| 2001 - 2002 || :  master degree in Mechanics and Engineering, Biomechanics option, ULP, Strasbourg   
 
|-
 
|-
| 1999 - 2002 || :  Ingénieur ENSPS (Ecole Nationale Supérieure de Physique de Strasbourg)
+
| 1999 - 2002 || :  Engineer degree from ENSPS (Ecole Nationale Supérieure de Physique de Strasbourg)
 
|}
 
|}
  
== Encadrements ==
+
== PhD thesis supervision ==
 +
 
 +
current thesis:
  
Thèses en cours :
+
* "Unified framework for change detection in multimodal brain MRI. Application to the follow-up of multiple sclerosis patients", Thesis of Eléonore Dufresne, (2018-), Co-direction with Stéphane Kremer, supervisor: Denis Fortun
  
* "Imagerie quantitative de la ventilation par tomodensitométrie double-énergie", Thèse d'[[Mickael Ohana]] (2013- ), Co-encadrement avec [[Fabrice Heitz]] et Catherie Roy
+
* "Semantic segmentation of 3D CT images of the lung using deep learning.", Thesis of Adrien Heitz (2020-), Co-direction with Fabrice Heitz (director). CIFRE thesis with Visible Patient.
  
* "Détection statistique de changements longitudinaux en imagerie IRM anatomique et de diffusion. Application aux pathologies dégénératives du système nerveux central", Thèse d'[[Alix Bouchon]] (2012- ), Co-encadrement avec [[Fabrice Heitz]]
+
* "Analysis of mouse brain MRI by deep learning. Application to the characterization of mouse models for the study of chronic pain comorbidity and anxiety disorders.", Thesis of Franck Valentini.(2021-), Co-direction with Laura Harsan.
  
Thèses soutenues :
+
defended thesis:
  
* "Détection de changements en IRM de diffusion. Application à la détection précoce de l'évolution des tumeurs cérébrales et des lésions de sclérose en plaques", Thèse d'[http://antoine.grigis.voila.net Antoine Grigis] (2009-2012), Co-encadrement avec [[Fabrice Heitz]] et [http://www-ipb.u-strasbg.fr/staff/armspach/ Jean-Paul Armspach].
+
* "Novel radiomics approaches for characterization of liver tumours by image analysis", Thesis of Farid Ouhmich (2017-2021), Co-direction with [[Fabrice Heitz]], supervisor: Vincent Agnus.
  
* "Reconstruction et suivi de fibres en imagerie par résonance magnétique du tenseur de diffusion. Application à l’étude longitudinale en sclérose en plaques", Thèse de [http://herve.boisgontier.free.fr Hervé Boisgontier] (2006-2010), Co-encadrement avec [[Fabrice Heitz]] et [http://www-ipb.u-strasbg.fr/staff/armspach/ Jean-Paul Armspach].
+
* "Development of a computer model to optimize donor/receiver matching in liver transplantation", Thesis of Pietro Addeo (2017-2021), Co-supervision with  [[Benoit Naegel]] (director), Philippe Bachellier (co-director) and [[Adrien Krähenbühl]] (supervisor).
  
== Enseignements ==
+
* "Diagnostical biomarkers in multimodal brain MRI of Lewy body disease and Alzheimer's disease", Thesis of Elena Chabran (2016-2019), Co-direction with Frédéric Blanc
* TD Traitement du signal (1A/2A) à l'école [http://www.telecom-physique.fr Telecom Physique Strasbourg]
 
* Cours "[[Dispositifs d'imagerie médicale]]" dans le [http://master-iriv.u-strasbg.fr Master Images, Sciences et Technologies de l'Information] (Université de Strasbourg)
 
  
== Publications ==
+
* "Multivariate regression model for comparing populations in diffusion MRI", Thesis of [http://icube-miv.unistra.fr/fr/index.php/Alix_Bouchon Alix Bouchon] (2012-2016), Co-supervision with [[Fabrice Heitz]]
 +
 
 +
* "Quantitative imaging of ventilation double-energy computed tomography", Thesis of [http://icube-miv.unistra.fr/fr/index.php/Mickael_Ohana Mickael Ohana] (2013-2016), Co-supervision with [[Fabrice Heitz]] and Catherine Roy
  
<anyweb>
+
* "[http://antoine.grigis.voila.net/files/publication/phd12.pdf.zip Statistical approaches for change detection in diffusion MRI. Application to the longitudinal follow-up of neuro-degenerative pathologies]", Thesis of [http://antoine.grigis.voila.net Antoine Grigis] (2009-2012), Co-supervision with [[Fabrice Heitz]] and [http://www-ipb.u-strasbg.fr/staff/armspach/ Jean-Paul Armspach].
http://icube-publis.unistra.fr/?author=noblet&title=&team=7&annee1=&annee2=&display=rap+&nationalRank=toutes&project=tous&hide=0
 
</anyweb>
 
  
== Description of Activities ==
+
* "[http://herve.boisgontier.free.fr/cv/ressources/theseHerveBoisgontier.pdf Automatic changes detection in diffusion MRI: Application to Multiple Sclerosis]", Thesis of [http://herve.boisgontier.free.fr Hervé Boisgontier] (2006-2010), Co-supervision with [[Fabrice Heitz]] and [http://www-ipb.u-strasbg.fr/staff/armspach/ Jean-Paul Armspach].
  
My research activities are in the field of medical image processing and are mainly focused on two topics:
+
== Teaching ==
* image registration
+
* Signal processing (1A/2A) at école [http://www.telecom-physique.fr Telecom Physique Strasbourg]
* change detection in image sequences
+
* "[http://images.icube.unistra.fr/fr/index.php/Dispositifs_d%27imagerie_m%C3%A9dicale Medical image devices ]" in the Master "[http://master-iriv.u-strasbg.fr/index.php Images, Robotique et Ingénierie du Vivant]" (Strasbourg University)
+
* Lectures about "[http://images.icube.unistra.fr/fr/index.php/Traitement_d%27images_TICS2A Image processing]" at école [http://www.telecom-physique.fr Telecom Physique Strasbourg], [http://ticsante.u-strasbg.fr TI santé] degree
Supervised thesis:
+
* Lectures about "[http://images.icube.unistra.fr/fr/index.php/Introduction_aux_traitement_d%27images_m%C3%A9dicales Introduction to medical image processing]" at école [http://www.telecom-physique.fr Telecom Physique Strasbourg], [http://ticsante.u-strasbg.fr TI santé] degree
 +
* Lectures about "Medical image processing: methods and applications" at école [http://www.telecom-physique.fr Telecom Physique Strasbourg], [http://ticsante.u-strasbg.fr TI santé] degree
  
* "Statistical change detection in longitudinal diffusion weighted MRI sequences. Application to neurodegenerative diseases", [[Alix Bouchon]] (2012 - ), co-supervised with [[Fabrice Heitz]]
+
== Publications ==
  
* "Statistical approches for change detection in diffusion MRI. Application to the longitudinal follow-up of neuro-degenerative pathologies", [http://antoine.grigis.voila.net Antoine Grigis] (2009-2012), co-supervised with [[Fabrice Heitz]] and [http://www-ipb.u-strasbg.fr/staff/armspach/ Jean-Paul Armspach].
+
=== Journals ===
  
* "Automatic change detection in diffusion MRI. Application to multiple sclerosis", [http://herve.boisgontier.free.fr Hervé Boisgontier] (2006-2010), co-supervised with [[Fabrice Heitz]] and [http://www-ipb.u-strasbg.fr/staff/armspach/ Jean-Paul Armspach].
+
<iframe key="papr" path="?author=noblet&title=&labo=4&team=7&annee1=&annee2=&display=rap+&nationalRank=toutes&project=tous&opt_articles=true&=#hideMenu" />
  
Teaching :
 
* Signal processing (1A/2A) at école [http://www.telecom-physique.fr Telecom Physique Strasbourg]
 
* "[http://icube-miv.unistra.fr/fr/index.php/Dispositifs_d%27imagerie_m%C3%A9dicale Medical image devices ]" in the Master "[http://master-iriv.u-strasbg.fr/index.php Images, Sciences et Technologies de l'Information]" (Strasbourg University)
 
  
== Publications ==
+
=== Conferences ===
  
<anyweb>
+
<iframe key="papr" path="?author=noblet&title=&labo=4&team=7&annee1=&annee2=&display=rap+&nationalRank=toutes&project=tous&opt_conf=true&=#hideMenu" />
http://icube-publis.unistra.fr/?author=noblet&title=&team=6&annee1=&annee2=&display=rap+&nationalRank=toutes&project=tous&hide=0
 
</anyweb>
 

Latest revision as of 09:27, 11 October 2021

Research Engineer - HDR
       Head of Biomedical image processing group
       Head of GAIA platform
       Head of computer science and image processing department of IRIS platform

ICube - IMAGeS
300 Bd Sébastien Brant
BP 10413
67412 Illkirch CEDEX - France

Illkirch site:
Phone: + 33 (0) 3 68 85 44 89
Office: C211

IPB site:
Phone: + 33 (0) 3 68 85 40 42
Office: 109

E-mail: vincent(dot)noblet(at)unistra(dot)fr

Description of activities

My research activities in the IMAGeS team are within the field of Biomedical image processing and cover two main areas:

  • image registration
  • change detection in image sequences

Furthermore, as part of my activities within the IRIS plateform, I bring my expertise to the investigation of various problems in neuroscience requiring the setting up of appropriate image processing pipelines and the exploitation of large image databases.

Course

Since 2005 : Research Engineer, CNRS, ICube
june 2015 : Habilitation degree , UDS, Strasbourg
2002 - 2006 : PhD degree, LSIIT, UMR 7005, ULP, Strasbourg
2001 - 2002 : master degree in Mechanics and Engineering, Biomechanics option, ULP, Strasbourg
1999 - 2002 : Engineer degree from ENSPS (Ecole Nationale Supérieure de Physique de Strasbourg)

PhD thesis supervision

current thesis:

  • "Unified framework for change detection in multimodal brain MRI. Application to the follow-up of multiple sclerosis patients", Thesis of Eléonore Dufresne, (2018-), Co-direction with Stéphane Kremer, supervisor: Denis Fortun
  • "Semantic segmentation of 3D CT images of the lung using deep learning.", Thesis of Adrien Heitz (2020-), Co-direction with Fabrice Heitz (director). CIFRE thesis with Visible Patient.
  • "Analysis of mouse brain MRI by deep learning. Application to the characterization of mouse models for the study of chronic pain comorbidity and anxiety disorders.", Thesis of Franck Valentini.(2021-), Co-direction with Laura Harsan.

defended thesis:

  • "Novel radiomics approaches for characterization of liver tumours by image analysis", Thesis of Farid Ouhmich (2017-2021), Co-direction with Fabrice Heitz, supervisor: Vincent Agnus.
  • "Development of a computer model to optimize donor/receiver matching in liver transplantation", Thesis of Pietro Addeo (2017-2021), Co-supervision with Benoit Naegel (director), Philippe Bachellier (co-director) and Adrien Krähenbühl (supervisor).
  • "Diagnostical biomarkers in multimodal brain MRI of Lewy body disease and Alzheimer's disease", Thesis of Elena Chabran (2016-2019), Co-direction with Frédéric Blanc
  • "Multivariate regression model for comparing populations in diffusion MRI", Thesis of Alix Bouchon (2012-2016), Co-supervision with Fabrice Heitz
  • "Quantitative imaging of ventilation double-energy computed tomography", Thesis of Mickael Ohana (2013-2016), Co-supervision with Fabrice Heitz and Catherine Roy

Teaching

Publications

Journals


Conferences